Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs79497119 | chr3:122073488 | C/G | 8.42E-7 | 486 | 16.33 | 15.7 | 5.93 | KM Plot |
| THCA | rs79502578 | chr12:131365616 | T/G | 0.000153 | 488 | 16.07 | 14.97 | 15.9 | KM Plot |
| THCA | rs7950384 | chr11:4164726 | A/G | 1.74E-7 | 490 | 19.05 | 13.9 | 16.38 | KM Plot |
| THCA | rs7951836 | chr11:4168764 | C/T | 1.74E-7 | 490 | 19.05 | 13.9 | 16.38 | KM Plot |
| THCA | rs79527965 | chr6:24418786 | T/C | 5.33E-15 | 489 | 16.33 | 14.85 | 11.07 | KM Plot |
| THCA | rs79530766 | chr14:59675486 | G/A | 0 | 487 | 15.9 | 16.4 | 3.53 | KM Plot |
| THCA | rs79554492 | chr6:24458296 | G/A | 2.66E-7 | 485 | 16.37 | 15.63 | 7.43 | KM Plot |
| THCA | rs79572060 | chr4:39469279 | A/T | 4.44E-15 | 489 | 15.9 | 17.38 | 6.1 | KM Plot |
| THCA | rs79611136 | chr3:56570877 | G/A | 4.04E-6 | 485 | 16.8 | 12.6 | 8.47 | KM Plot |
| THCA | rs79645458 | chr8:52468046 | T/A | 1.19E-14 | 485 | 16.6 | 14.38 | 5.8 | KM Plot |
| THCA | rs79660774 | chr11:26653449 | G/A | 0.00029 | 488 | 15.83 | 16.62 | 9 | KM Plot |
| THCA | rs79664242 | chr6:24424231 | G/T | 0 | 484 | 16.37 | 14.8 | 9.25 | KM Plot |
| THCA | rs79669481 | chr14:36079583 | G/C | 5.63E-6 | 483 | 15.97 | 16.35 | 8.33 | KM Plot |
| THCA | rs79676525 | chr14:59612800 | A/T | 5.31E-10 | 484 | 15.9 | 16.48 | 6.83 | KM Plot |
| THCA | rs79704124 | chr6:47571625 | G/A | 4.7E-5 | 488 | 15.48 | 20.73 | 6.97 | KM Plot |